C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 48 (heme transporter), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000442218 SLC48A1-001 ENSG00000211584 9606 + 12:47773208-47782753 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000442218
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000442218 26.369±0.00 17.925±0.00 5.209±0.00 43.840±22.78 29.579±0.00 10.406±7.36 14.759±0.00 40.181±38.00 6.250±0.87 15.236±12.31 27.396±0.00 43.339±11.46 18.825±3.65 13.399±5.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YT CIL_0005YT_0001 CGP 12:47709734-47771040
CIL_0002OC CIL_0002OC_0001 CGP 12:47734672-47782753
CIL_0003DF CIL_0003DF_0002 CGP 12:47753916-47833132

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005764 IEA lysosome
GO:0005768 IEA endosome
GO:0015232 IEA heme transporter activity
GO:0015886 IMP heme transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117892 Slc48a1-001 protein_coding Mus_musculus 0 627
ENSMUST00000135073 Slc48a1-002 nonsense_mediated_decay Mus_musculus 0 213
ENSMUST00000081104 Timm17a-001 protein_coding Mus_musculus 0.00002 57
ENSMUST00000165187 Slc25a23-002 retained_intron Mus_musculus 0.00002 57

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