C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: notchless homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000442241 NLE1-001 ENSG00000073536 9606 - 17:35131347-35142315 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000442241
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000442241 1.892±0.00 3.774±0.00 0.031±0.00 1.177±0.48 2.496±0.00 1.627±0.00 0.344±0.00 2.214±0.00 1.214±0.00 0.812±0.00 2.486±0.00 2.937±1.41 2.420±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ES CIL_0006ES_0001 CGP 17:35092208-35130732
CIL_0003B9 CIL_0003B9_0001 CGP 17:35121579-35142315
CIL_0003K1 CIL_0003K1_0001 CGP 17:35128753-35189345

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001826 IEA inner cell mass cell differentiation
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0007219 IEA Notch signaling pathway
GO:0042273 IEA ribosomal large subunit biogenesis
GO:0045930 IEA negative regulation of mitotic cell cycle
GO:0061484 IEA hematopoietic stem cell homeostasis
GO:0090263 IEA positive regulation of canonical Wnt signaling pathway
GO:2001268 IEA negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103213 Nle1-001 protein_coding Mus_musculus 0 1868
ENSMUST00000147915 Nle1-003 retained_intron Mus_musculus 0 839
ENSMUST00000126202 Nle1-002 nonsense_mediated_decay Mus_musculus 0 556
ENSMUST00000167196 Nle1-006 nonsense_mediated_decay Mus_musculus 0 527
ENSMUST00000140318 Nle1-004 retained_intron Mus_musculus 0 468
ENSMUST00000124109 Nle1-005 retained_intron Mus_musculus 3e-32 145

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