C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HLA complex group 4 pseudogene 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000443049 HCG4P8-001 ENSG00000229142 9606 - 6:29827385-29828364 unprocessed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaENST00000443049
Transcript ID Ovary Placenta
ENST00000443049 0.161±0.00 32.863±8.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000420 CIL_000420_0003 CGP 6:29722775-29831125
CIL_000420 CIL_000420_0002 CGP 6:29826967-29945884

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174250 H2-K2-001 unprocessed_pseudogene Mus_musculus 0 257
ENSMUST00000174589 H2-Q10-002 retained_intron Mus_musculus 0 248
ENSMUST00000174161 H2-T23-003 retained_intron Mus_musculus 0 237
ENSMUST00000068291 H2-Q10-201 protein_coding Mus_musculus 0 231
ENSMUST00000174525 H2-Q10-001 protein_coding Mus_musculus 0 231
ENSMUST00000074806 H2-Q2-001 protein_coding Mus_musculus 0 230
ENSMUST00000097335 Gm8909-201 protein_coding Mus_musculus 0 230
ENSMUST00000040467 Gm8909-001 protein_coding Mus_musculus 0 230
ENSMUST00000173353 Gm8909-002 protein_coding Mus_musculus 0 230
ENSMUST00000173975 H2-Q4-002 retained_intron Mus_musculus 0 222
ENSMUST00000174471 H2-T23-005 retained_intron Mus_musculus 0 220
ENSMUST00000174839 H2-T23-002 retained_intron Mus_musculus 0 220
ENSMUST00000102678 H2-T23-001 protein_coding Mus_musculus 0 220
ENSMUST00000172538 C920025E04Rik-001 unprocessed_pseudogene Mus_musculus 0 219
ENSMUST00000076256 H2-Q7-201 protein_coding Mus_musculus 0 213
ENSMUST00000078205 H2-Q7-202 protein_coding Mus_musculus 0 213
ENSMUST00000116598 H2-Q7-203 protein_coding Mus_musculus 0 213
ENSMUST00000173788 H2-Q7-003 retained_intron Mus_musculus 0 213
ENSMUST00000071951 H2-Q7-001 protein_coding Mus_musculus 0 213
ENSMUST00000081435 H2-Q4-001 protein_coding Mus_musculus 0 213
ENSMUST00000172979 H2-Q5-001 polymorphic_pseudogene Mus_musculus 0 213
ENSMUST00000174854 H2-Q5-002 retained_intron Mus_musculus 0 213
ENSMUST00000172785 H2-D1-001 protein_coding Mus_musculus 0 207
ENSMUST00000174778 Gm10499-001 retained_intron Mus_musculus 0 204
ENSMUST00000172994 H2-Q1-003 retained_intron Mus_musculus 0 191
ENSMUST00000113879 H2-Q6-201 protein_coding Mus_musculus 0 191
ENSMUST00000174699 H2-Q6-001 protein_coding Mus_musculus 0 191
ENSMUST00000073208 H2-Q1-001 protein_coding Mus_musculus 5.60519e-45 185
ENSMUST00000105041 H2-Q1-002 protein_coding Mus_musculus 5.60519e-45 185
ENSMUST00000174094 Gm10499-002 transcribed_unprocessed_pseudogene Mus_musculus 7.9874e-44 182

Loading