C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PAX3 and PAX7 binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000443785 PAXBP1-006 ENSG00000159086 9606 - 21:32734820-32771687 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartLiverOvaryPlacentaENST00000443785
Transcript ID Breast Heart Liver Ovary Placenta
ENST00000443785 2.041±0.00 0.425±0.00 1.252±0.00 3.624±0.00 0.455±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0001 VISTA 21:32549146-33151638
CIL_00087M CIL_00087M_0001 VISTA 21:32616647-33220574
CIL_0009BQ CIL_0009BQ_0001 VISTA 21:32618474-33219807
CIL_000089 CIL_000089_0001 CGP 21:32628759-32771858
CIL_0003TV CIL_0003TV_0001 CGP 21:32733899-32813743

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005829 IDA cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007517 IEA muscle organ development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118522 Paxbp1-001 protein_coding Mus_musculus 0 3557
ENSMUST00000023698 Paxbp1-002 nonsense_mediated_decay Mus_musculus 0 3448
ENSMUST00000127002 Paxbp1-007 processed_transcript Mus_musculus 0 1712
ENSMUST00000146281 Paxbp1-003 retained_intron Mus_musculus 0 941
ENSMUST00000124653 Paxbp1-004 retained_intron Mus_musculus 0 527
ENSMUST00000128922 Paxbp1-005 retained_intron Mus_musculus 0 327
ENSMUST00000145136 Paxbp1-008 nonsense_mediated_decay Mus_musculus 0 324

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