C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type XI, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000444237 SCN11A-002 ENSG00000168356 9606 - 3:38849278-38950561 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastKidneyPlacentaTestisENST00000444237
Transcript ID Adrenal Bladder Brain Breast Kidney Placenta Testis
ENST00000444237 0.031±0.00 0.073±0.00 0.028±0.00 0.135±0.00 0.021±0.00 0.113±0.00 0.311±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BE CIL_0008BE_0001 VISTA 3:38261144-38866061
CIL_0004RE CIL_0004RE_0001 CGP 3:38696802-38950561
CIL_0006H1 CIL_0006H1_0001 CGP 3:38845769-39096671

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005216 IEA ion channel activity
GO:0005248 IBA:IEA voltage-gated sodium channel activity
GO:0005886 IBA plasma membrane
GO:0006811 IEA ion transport
GO:0006814 TAS:IEA sodium ion transport
GO:0008219 IEA cell death
GO:0016020 IEA membrane
GO:0019228 IBA neuronal action potential
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IBA sodium ion transmembrane transport
GO:0042493 TAS response to drug
GO:0051930 ISS regulation of sensory perception of pain
GO:0055085 IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070617 Scn11a-201 protein_coding Mus_musculus 0 1585
ENSMUST00000100067 Scn2a1-201 protein_coding Mus_musculus 0 281
ENSMUST00000028377 Scn2a1-001 protein_coding Mus_musculus 0 281
ENSMUST00000112371 Scn1a-201 protein_coding Mus_musculus 0 254
ENSMUST00000094951 Scn1a-005 protein_coding Mus_musculus 0 254
ENSMUST00000077489 Scn1a-004 protein_coding Mus_musculus 0 254
ENSMUST00000112366 Scn1a-001 protein_coding Mus_musculus 0 254
ENSMUST00000169900 Scn9a-203 protein_coding Mus_musculus 0 243
ENSMUST00000100063 Scn9a-201 protein_coding Mus_musculus 0 243
ENSMUST00000164384 Scn9a-202 protein_coding Mus_musculus 0 243
ENSMUST00000112354 Scn9a-002 protein_coding Mus_musculus 0 243
ENSMUST00000100064 Scn9a-001 protein_coding Mus_musculus 0 243
ENSMUST00000156865 Scn1a-003 processed_transcript Mus_musculus 0 230

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