C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TSEN2 tRNA splicing endonuclease subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446004 TSEN2-004 ENSG00000154743 9606 + 3:12484432-12528924 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLungMuscleOvaryPlacentaTestisENST00000446004
Transcript ID Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000446004 1.696±0.00 1.800±0.00 1.635±0.00 0.758±0.00 1.730±0.14 3.414±0.00 1.060±0.00 2.481±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004K9 CIL_0004K9_0001 CGP 3:12287368-12539623
CIL_0005SH CIL_0005SH_0001 CGP 3:12484432-12561059

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000213 IEA tRNA-intron endonuclease activity
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0006388 IEA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040234 Tsen2-001 protein_coding Mus_musculus 0 337
ENSMUST00000143520 Tsen2-005 processed_transcript Mus_musculus 0.00000004 64

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