C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, gamma 1 pseudogene 14
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446382 ACTG1P14-001 ENSG00000230581 9606 + 9:6834456-6835577 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000446382
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000446382 0.459±0.00 0.923±0.00 0.250±0.00 0.292±0.00 0.623±0.16 0.753±0.21 0.069±0.01 0.178±0.00 0.155±0.10 0.332±0.14 0.265±0.00 0.125±0.07 0.252±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001D7 CIL_0001D7_0001 CGP 9:6757641-7888380

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1286
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 1050
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 1050
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 1038
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 990
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 990
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 983
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 942
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 911
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 898
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 865
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 839
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 837
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 817
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 809
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 809
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 809
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 809
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 802
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 798
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 789
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 765
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 749
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 745
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 737
ENSDART00000080664 protein_coding Danio_rerio 0 719
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 706
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 697
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 675
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 654
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 534
ENSDART00000138324 actb1-004 protein_coding Danio_rerio 0 529
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 475
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 473
ENSDART00000148067 actb1-003 processed_transcript Danio_rerio 0 470
ENSDART00000141407 actb1-002 protein_coding Danio_rerio 0 409
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 383
ENSMUST00000184183 Gm17087-002 protein_coding Mus_musculus 0 375
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 374
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 300
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 294
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 285
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 2.99878e-43 180
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 4e-37 159
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0.000000000000007 86

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