C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COMM domain containing 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446419 COMMD7-004 ENSG00000149600 9606 - 20:32702703-32743455 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000446419
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000446419 13.622±0.00 21.865±0.00 1.774±0.00 7.901±4.35 13.841±11.02 10.235±9.50 11.333±11.06 14.273±11.67 8.751±4.80 7.349±6.07 6.502±2.82 24.867±19.08 43.789±12.64 14.077±1.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A4 CIL_0008A4_0001 VISTA 20:32224531-32829311
CIL_0008NQ CIL_0008NQ_0001 VISTA 20:32326689-32928341
CIL_0008QN CIL_0008QN_0001 VISTA 20:32676112-33281064
CIL_00036W CIL_00036W_0001 CGP 20:32702691-32809356

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0032088 IDA negative regulation of NF-kappaB transcription factor activity
GO:0033209 IDA tumor necrosis factor-mediated signaling pathway
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0051059 IDA NF-kappaB binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071852 Commd7-001 protein_coding Mus_musculus 0 721
ENSMUST00000109782 Commd7-002 protein_coding Mus_musculus 0 612
ENSMUST00000147822 Commd7-003 retained_intron Mus_musculus 0 569

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