C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: RAB5A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446547 RAB5A-002 ENSG00000144566 9606 + 3:19947399-19984147 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENST00000446547
Transcript ID Liver
ENST00000446547 2.322±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VJ CIL_0002VJ_0002 CGP 3:19879472-19985175
CIL_0004HT CIL_0004HT_0001 CGP 3:19947079-20012330

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0007264 IEA small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017975 Rab5a-201 protein_coding Mus_musculus 0 719
ENSMUST00000122122 Gm12045-001 processed_pseudogene Mus_musculus 0 331

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