C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L21 pseudogene 23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446654 RPL21P23-001 ENSG00000236776 9606 + 1:56538452-56538911 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverLungMuscleOvaryENST00000446654
Transcript ID Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000446654 0.231±0.07 0.633±0.48 0.026±0.00 0.027±0.00 1.229±0.00 1.312±0.00 0.987±0.00 0.134±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Q8 CIL_0007Q8_0001 VISTA 1:55987109-56588315
CIL_00005E CIL_00005E_0002 CGP 1:56494747-56715335

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 320
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 320
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 320
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 316
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 315
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 309
ENSMUST00000119897 Rpl21-ps9-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000077278 Rpl21-ps11-201 processed_pseudogene Mus_musculus 0 303
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 298
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 292
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 292
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 287
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 287
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 265
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 252
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 189
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 189
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 8.00001e-41 171
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 3e-40 169
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 1e-33 147
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 4e-19 99

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