C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446848 SNX10-201 ENSG00000086300 9606 + 7:26291895-26374317 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLungPlacentaENST00000446848
Transcript ID Breast Heart Kidney Lung Placenta
ENST00000446848 8.249±0.00 0.240±0.00 11.334±0.00 3.235±0.00 0.780±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q3 CIL_0008Q3_0001 VISTA 7:25714231-26318034
CIL_000874 CIL_000874_0001 VISTA 7:25760923-26361842
CIL_0009DE CIL_0009DE_0001 VISTA 7:26185042-26786016
CIL_0007OD CIL_0007OD_0001 UCNEbase 7:26191819-26506343
CIL_0002CN CIL_0002CN_0001 CGP 7:26201162-26374329

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005545 IMP 1-phosphatidylinositol binding
GO:0005634 IDA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0005813 IDA centrosome
GO:0006886 IBA intracellular protein transport
GO:0007032 IMP endosome organization
GO:0030316 ISS osteoclast differentiation
GO:0031313 IDA extrinsic component of endosome membrane
GO:0035091 IEA phosphatidylinositol binding
GO:0042384 IMP cilium assembly
GO:0051117 IPI ATPase binding
GO:0061512 IMP protein localization to cilium
GO:0071539 IMP protein localization to centrosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000179365 Snx10-201 protein_coding Mus_musculus 0 885
ENSMUST00000049152 Snx10-001 protein_coding Mus_musculus 0 885
ENSMUST00000114439 Snx10-004 protein_coding Mus_musculus 0 798
ENSMUST00000137212 Snx10-006 protein_coding Mus_musculus 0 665
ENSMUST00000116606 Gm14806-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000137642 Gm15534-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000149024 Snx10-003 nonsense_mediated_decay Mus_musculus 0 492
ENSMUST00000140560 Snx10-005 protein_coding Mus_musculus 0 390

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