C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger E-box binding homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446923 ZEB1-202 ENSG00000148516 9606 + 10:31321135-31529813 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000446923
Transcript ID Brain
ENST00000446923 2.153±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000R6 CIL_0000R6_0001 CGP 10:30820207-31529814
CIL_0000R1 CIL_0000R1_0001 CGP 10:31318495-31928876

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003713 TAS transcription coactivator activity
GO:0003714 TAS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006955 TAS immune response
GO:0008270 TAS zinc ion binding
GO:0008283 TAS cell proliferation
GO:0045666 ISS positive regulation of neuron differentiation
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0070888 ISS E-box binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025081 Zeb1-001 protein_coding Mus_musculus 0 3155
ENSMUST00000177030 Zeb1-003 processed_transcript Mus_musculus 0 2303
ENSMUST00000162892 Zeb1-009 retained_intron Mus_musculus 0 2132
ENSMUST00000175925 Zeb1-010 nonsense_mediated_decay Mus_musculus 0 1637
ENSMUST00000161295 Zeb1-007 nonsense_mediated_decay Mus_musculus 0 1016
ENSMUST00000159390 Zeb1-008 protein_coding Mus_musculus 0 802
ENSMUST00000177070 Zeb1-011 processed_transcript Mus_musculus 0 610
ENSMUST00000160910 Zeb1-006 protein_coding Mus_musculus 0 388
ENSMUST00000175739 Zeb1-004 processed_transcript Mus_musculus 0 305
ENSDART00000047724 zeb1b-001 protein_coding Danio_rerio 7e-37 161
ENSDART00000136077 zeb1a-003 protein_coding Danio_rerio 0.0000007 62
ENSDART00000146493 zeb1a-001 protein_coding Danio_rerio 0.0000007 62

Loading