C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sarcoglycan, epsilon
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000447873 SGCE-005 ENSG00000127990 9606 - 7:94585257-94656166 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonOvaryPlacentaTestisENST00000447873
Transcript ID Adipose Adrenal Breast Colon Ovary Placenta Testis
ENST00000447873 2.886±0.00 4.014±0.00 2.589±0.00 0.653±0.00 5.465±0.00 5.450±1.66 6.400±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082O CIL_00082O_0001 VISTA 7:94046650-94649568
CIL_0007XR CIL_0007XR_0001 VISTA 7:94067785-94669696
CIL_00095G CIL_00095G_0001 VISTA 7:94074791-94676705
CIL_0008ZR CIL_0008ZR_0001 VISTA 7:94144032-94745602
CIL_0004SP CIL_0004SP_0002 CGP 7:94509219-94656209
CIL_0006DZ CIL_0006DZ_0001 CGP 7:94585230-94669695

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0016012 IEA sarcoglycan complex
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090686 Sgce-007 protein_coding Mus_musculus 0 1840
ENSMUST00000004750 Sgce-201 protein_coding Mus_musculus 0 1668
ENSMUST00000123907 Sgce-005 protein_coding Mus_musculus 0 1531
ENSMUST00000126151 Sgce-003 protein_coding Mus_musculus 0 1506
ENSMUST00000101677 Sgce-202 protein_coding Mus_musculus 0 1421
ENSMUST00000115579 Sgce-001 protein_coding Mus_musculus 0 1421
ENSMUST00000128109 Sgce-006 processed_transcript Mus_musculus 0 1343
ENSMUST00000133306 Sgce-004 protein_coding Mus_musculus 0 1258
ENSMUST00000115577 Sgce-203 protein_coding Mus_musculus 0 1195
ENSMUST00000153284 Sgce-002 processed_transcript Mus_musculus 0 1195
ENSMUST00000139029 Sgce-008 processed_transcript Mus_musculus 0 998

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