C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000448547 AC007279.2-001 ENSG00000230799 9606 + 2:201762737-201763573 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000448547
Transcript ID Adrenal Bladder Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000448547 0.305±0.00 0.227±0.00 0.056±0.00 0.350±0.00 0.685±0.00 0.237±0.00 0.592±0.00 0.311±0.34 0.104±0.00 0.153±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CR CIL_0009CR_0001 VISTA 2:201587932-202188948
CIL_0000JK CIL_0000JK_0002 CGP 2:201644870-201781189
CIL_0000JL CIL_0000JL_0002 CGP 2:201700554-201895550

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121190 Gm7860-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000121414 Rps2-ps9-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000117512 Gm7222-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000119578 Gm11643-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000121811 Gm6881-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000190239 RP23-16N14.5-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000121348 Gm7638-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000116032 Gm16073-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000119539 Gm14234-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000119396 Gm12959-001 processed_pseudogene Mus_musculus 0 206

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