C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lymphocyte-specific protein 1 pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000449530 LSP1P3-001 ENSG00000162685 9606 + 5:28926816-28927023 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastPlacentaTestisENST00000449530
Transcript ID Breast Placenta Testis
ENST00000449530 2.259±0.00 0.284±0.00 0.587±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MJ CIL_0006MJ_0003 CGP 5:26880600-31329146

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000142408 Lsp1-011 retained_intron Mus_musculus 1.4013e-45 185
ENSMUST00000126149 Lsp1-010 retained_intron Mus_musculus 1.4013e-45 185
ENSMUST00000149521 Lsp1-003 processed_transcript Mus_musculus 1.4013e-45 185
ENSMUST00000105966 Lsp1-004 protein_coding Mus_musculus 1.4013e-45 185
ENSMUST00000038946 Lsp1-005 protein_coding Mus_musculus 1.4013e-45 185
ENSMUST00000105967 Lsp1-002 protein_coding Mus_musculus 1.4013e-45 185
ENSMUST00000018963 Lsp1-001 protein_coding Mus_musculus 1.4013e-45 185
ENSMUST00000105968 Lsp1-012 protein_coding Mus_musculus 1.4013e-45 185
ENSMUST00000140626 Lsp1-008 processed_transcript Mus_musculus 9e-17 90

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