C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: bromodomain, testis-specific
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000449584 BRDT-007 ENSG00000137948 9606 + 1:91949398-91962910 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LungOvaryENST00000449584
Transcript ID Lung Ovary
ENST00000449584 0.139±0.00 0.067±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DI CIL_0008DI_0001 VISTA 1:91505983-92108430
CIL_0008YV CIL_0008YV_0001 VISTA 1:91545179-92146674
CIL_0005ZR CIL_0005ZR_0001 CGP 1:91680343-92014426
CIL_0005ZS CIL_0005ZS_0001 CGP 1:91949371-92063536

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112677 Brdt-003 protein_coding Mus_musculus 2e-28 130
ENSMUST00000031215 Brdt-001 protein_coding Mus_musculus 2e-28 130
ENSMUST00000043161 Gtf3c2-003 protein_coding Mus_musculus 0.000003 57
ENSMUST00000088010 Gtf3c2-001 protein_coding Mus_musculus 0.000003 57
ENSMUST00000151370 Gtf3c2-004 retained_intron Mus_musculus 0.000003 57

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