C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HLA complex group 4B (non-protein coding)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000450128 HCG4B-001 ENSG00000227262 9606 - 6:29925983-29926973 unprocessed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000450128
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000450128 0.457±0.00 0.728±0.00 0.288±0.00 0.137±0.04 0.245±0.15 1.356±0.49 2.541±0.00 0.347±0.00 0.649±0.12 0.195±0.00 0.430±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000420 CIL_000420_0002 CGP 6:29826967-29945884

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074806 H2-Q2-001 protein_coding Mus_musculus 0 217
ENSMUST00000097335 Gm8909-201 protein_coding Mus_musculus 0 202
ENSMUST00000040467 Gm8909-001 protein_coding Mus_musculus 0 202
ENSMUST00000173353 Gm8909-002 protein_coding Mus_musculus 0 202
ENSMUST00000174250 H2-K2-001 unprocessed_pseudogene Mus_musculus 0 200
ENSMUST00000174161 H2-T23-003 retained_intron Mus_musculus 0 200
ENSMUST00000172979 H2-Q5-001 polymorphic_pseudogene Mus_musculus 0 195
ENSMUST00000174854 H2-Q5-002 retained_intron Mus_musculus 0 195
ENSMUST00000174471 H2-T23-005 retained_intron Mus_musculus 0 193
ENSMUST00000174839 H2-T23-002 retained_intron Mus_musculus 0 193
ENSMUST00000102678 H2-T23-001 protein_coding Mus_musculus 0 193
ENSMUST00000076256 H2-Q7-201 protein_coding Mus_musculus 5.60519e-45 185
ENSMUST00000078205 H2-Q7-202 protein_coding Mus_musculus 5.60519e-45 185
ENSMUST00000116598 H2-Q7-203 protein_coding Mus_musculus 5.60519e-45 185
ENSMUST00000173788 H2-Q7-003 retained_intron Mus_musculus 5.60519e-45 185
ENSMUST00000071951 H2-Q7-001 protein_coding Mus_musculus 5.60519e-45 185
ENSMUST00000172538 C920025E04Rik-001 unprocessed_pseudogene Mus_musculus 9.99967e-42 174
ENSMUST00000174778 Gm10499-001 retained_intron Mus_musculus 2e-40 171
ENSMUST00000174094 Gm10499-002 transcribed_unprocessed_pseudogene Mus_musculus 1e-36 158

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