C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 4E
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000450253 EIF4E-001 ENSG00000151247 9606 - 4:98871684-98930637 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000450253
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000450253 2.084±0.00 0.311±0.00 2.982±0.00 1.000±0.00 1.136±0.00 0.719±0.00 1.184±0.00 1.272±0.00 1.255±0.00 0.231±0.00 1.637±0.65 1.311±0.21 3.128±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LO CIL_0008LO_0001 VISTA 4:98355609-98958137

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 IMP G1/S transition of mitotic cell cycle
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0000339 TAS RNA cap binding
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003723 IEA RNA binding
GO:0003743 ISS:IEA translation initiation factor activity
GO:0005515 IPI protein binding
GO:0005737 IDA:IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005845 IDA mRNA cap binding complex
GO:0006406 TAS mRNA export from nucleus
GO:0006412 TAS translation
GO:0006413 TAS:IEA translational initiation
GO:0006417 IDA regulation of translation
GO:0008286 TAS insulin receptor signaling pathway
GO:0010467 TAS gene expression
GO:0010494 IDA cytoplasmic stress granule
GO:0016032 IEA viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016281 IDA eukaryotic translation initiation factor 4F complex
GO:0016442 IDA RISC complex
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045931 IMP positive regulation of mitotic cell cycle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029803 Eif4e-201 protein_coding Mus_musculus 0 2457
ENSMUST00000120925 Gm7327-001 processed_pseudogene Mus_musculus 0 963
ENSMUST00000105845 Ephb2-001 protein_coding Mus_musculus 0.00002 58
ENSMUST00000190245 Neil1-002 protein_coding Mus_musculus 0.0002 55

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