C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000452368 RPL13-015 ENSG00000167526 9606 + 16:89560683-89563952 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaENST00000452368
Transcript ID Ovary Placenta
ENST00000452368 124.095±44.16 74.311±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HA CIL_0008HA_0001 VISTA 16:89018329-89621235
CIL_000331 CIL_000331_0001 CGP 16:89490917-89566828
CIL_0006AP CIL_0006AP_0002 CGP 16:89560657-89597246

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0022626 TAS cytosolic ribosome
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000152444 Rpl13-003 retained_intron Mus_musculus 0 313
ENSMUST00000000756 Rpl13-001 protein_coding Mus_musculus 0 313
ENSMUST00000132275 Rpl13-004 retained_intron Mus_musculus 0 309
ENSMUST00000120234 Gm12918-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000121821 Gm15710-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000079761 Gm10071-201 processed_pseudogene Mus_musculus 0 292
ENSMUST00000129311 Rpl13-002 retained_intron Mus_musculus 0 289
ENSMUST00000104990 Gm7290-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000079960 Rpl13-ps3-201 protein_coding Mus_musculus 0 265
ENSMUST00000120713 Gm14585-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000119734 Gm12011-001 processed_pseudogene Mus_musculus 1.4013e-45 187
ENSMUST00000121199 Gm12466-001 processed_pseudogene Mus_musculus 1.00053e-42 178
ENSMUST00000119124 Gm15131-001 processed_pseudogene Mus_musculus 8.99999e-40 169
ENSMUST00000121801 Rpl13-ps1-001 processed_pseudogene Mus_musculus 3e-39 167
ENSMUST00000117813 Rpl13-ps5-001 processed_pseudogene Mus_musculus 3e-39 167

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