C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000391806}
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000452392 TAP2-001 ENSG00000250264 9606 - 6:32813767-32838822 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000452392
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000452392 5.173±0.00 0.715±0.00 3.802±0.00 3.030±0.84 1.202±0.59 7.443±0.00 2.294±0.00 1.416±0.69 5.372±1.61 5.901±2.86 3.083±2.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PK CIL_0001PK_0003 CGP 6:32756098-32817048

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002481 IBA antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
GO:0002485 IBA antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent
GO:0002489 IBA antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent
GO:0002504 IEA antigen processing and presentation of peptide or polysaccharide antigen via MHC class II
GO:0002591 IBA positive regulation of antigen processing and presentation of peptide antigen via MHC class I
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0006810 IEA transport
GO:0006955 IEA immune response
GO:0015197 IEA peptide transporter activity
GO:0015440 IEA peptide-transporting ATPase activity
GO:0015833 IEA peptide transport
GO:0016020 IEA membrane
GO:0016021 IBA:IEA integral component of membrane
GO:0016887 IEA ATPase activity
GO:0019882 IEA antigen processing and presentation
GO:0019885 IEA antigen processing and presentation of endogenous peptide antigen via MHC class I
GO:0030176 IEA integral component of endoplasmic reticulum membrane
GO:0042287 IEA MHC protein binding
GO:0042613 IEA MHC class II protein complex
GO:0042626 IBA:IEA ATPase activity, coupled to transmembrane movement of substances
GO:0042825 IEA TAP complex
GO:0055085 IBA:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025197 Tap2-001 protein_coding Mus_musculus 0 1489
ENSMUST00000127543 Tap2-002 retained_intron Mus_musculus 0 590

Loading