C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma binding protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000452655 RBBP6-003 ENSG00000122257 9606 + 16:24540496-24549401 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleENST00000452655
Transcript ID Liver Muscle
ENST00000452655 5.821±0.00 3.002±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VB CIL_0003VB_0002 CGP 16:24255553-24572863
CIL_0003V8 CIL_0003V8_0002 CGP 16:24537693-24827632

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005694 IEA chromosome
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0042787 IDA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098062 Rbbp6-005 protein_coding Mus_musculus 0 1013
ENSMUST00000052135 Rbbp6-001 protein_coding Mus_musculus 0 604
ENSMUST00000071590 Rbbp6-002 protein_coding Mus_musculus 0 475
ENSMUST00000137860 Rbbp6-007 retained_intron Mus_musculus 0 327

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