C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000452862 AC144530.1-001 ENSG00000234742 9606 - 3:197850400-197850954 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000452862
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000452862 0.183±0.00 0.422±0.00 0.231±0.00 0.220±0.12 0.563±0.17 0.109±0.01 0.255±0.00 0.071±0.05 0.661±0.25 0.123±0.00 0.634±0.00 0.204±0.02 0.166±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C7 CIL_0006C7_0001 CGP 3:197737179-197888436
CIL_0006C8 CIL_0006C8_0001 CGP 3:197791226-197960142

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 676
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 671
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 671
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 660
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 654
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 649
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 627
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 580
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 568
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 433
ENSMUST00000187749 RP23-305F24.2-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000162128 Gm16111-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000119087 Gm13013-001 processed_pseudogene Mus_musculus 0 296

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