C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: acid-sensing (proton-gated) ion channel 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000453327 ASIC1-007 ENSG00000110881 9606 + 12:50059887-50081940 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleENST00000453327
Transcript ID Brain Muscle
ENST00000453327 1.117±0.00 0.813±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0001 VISTA 12:49905565-50507504
CIL_0008CC CIL_0008CC_0001 VISTA 12:49906068-50507455
CIL_00071Y CIL_00071Y_0001 CGP 12:49976923-50083611

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005272 IEA sodium channel activity
GO:0006814 IEA sodium ion transport
GO:0015280 IEA ligand-gated sodium channel activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023758 Asic1-201 protein_coding Mus_musculus 0 1489
ENSDART00000028603 asic1b-201 protein_coding Danio_rerio 0 634
ENSDART00000140236 asic1b-001 protein_coding Danio_rerio 0 634
ENSDART00000105541 asic1a-201 protein_coding Danio_rerio 0 446
ENSDART00000004588 asic1a-001 protein_coding Danio_rerio 0 446

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