C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: SET domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000453764 SETD3-008 ENSG00000183576 9606 - 14:99405315-99480860 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KT CIL_0007KT_0001 UCNEbase 14:98137606-99417500
CIL_0005H1 CIL_0005H1_0001 CGP 14:99169287-99480879
CIL_0009CK CIL_0009CK_0001 VISTA 14:99273315-99877989
CIL_0003HD CIL_0003HD_0001 CGP 14:99397746-99535044

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000147466 Setd3-003 nonsense_mediated_decay Mus_musculus 0 1062
ENSMUST00000071095 Setd3-001 protein_coding Mus_musculus 0 881
ENSMUST00000132682 Setd3-002 nonsense_mediated_decay Mus_musculus 0 776
ENSMUST00000190159 RP23-75G11.2-001 processed_pseudogene Mus_musculus 0 769
ENSMUST00000120625 Gm14026-001 processed_pseudogene Mus_musculus 0 750
ENSMUST00000109879 Setd3-007 protein_coding Mus_musculus 0 688
ENSMUST00000118089 Gm8036-001 processed_pseudogene Mus_musculus 0 669
ENSMUST00000148119 Setd3-004 retained_intron Mus_musculus 0 198
ENSMUST00000125210 Setd3-006 processed_transcript Mus_musculus 0 196
ENSMUST00000169951 Setd3-008 processed_transcript Mus_musculus 2.99878e-43 180

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