C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB GTPase activating protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000456584 RABGAP1-005 ENSG00000011454 9606 + 9:122940833-123103268 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLiverOvaryENST00000456584
Transcript ID Heart Liver Ovary
ENST00000456584 0.359±0.00 1.774±0.00 2.145±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WQ CIL_0006WQ_0001 CGP 9:122915566-123104866

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005096 IDA GTPase activator activity
GO:0005097 IEA Rab GTPase activator activity
GO:0005515 IPI:IEA protein binding
GO:0005813 TAS centrosome
GO:0005829 IDA cytosol
GO:0005875 TAS microtubule associated complex
GO:0007049 IEA cell cycle
GO:0015631 TAS tubulin binding
GO:0017137 IPI Rab GTPase binding
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0033124 IDA regulation of GTP catabolic process
GO:0043547 TAS positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000061179 Rabgap1-201 protein_coding Mus_musculus 0 2338
ENSMUST00000112920 Rabgap1-004 protein_coding Mus_musculus 0 2338
ENSMUST00000066055 Rabgap1-001 protein_coding Mus_musculus 0 2338
ENSMUST00000159092 Rabgap1-007 processed_transcript Mus_musculus 0 1648
ENSMUST00000133434 Rabgap1-003 protein_coding Mus_musculus 0 1622
ENSMUST00000153145 Rabgap1-002 processed_transcript Mus_musculus 0 1256
ENSMUST00000130601 Rabgap1-006 processed_transcript Mus_musculus 0 754
ENSMUST00000148470 Rabgap1-005 protein_coding Mus_musculus 0 632

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