C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: major histocompatibility complex, class I, V (pseudogene)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000457107 HLA-V-003 ENSG00000181126 9606 + 6:29792223-29797811 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000457107
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000457107 0.087±0.00 0.131±0.00 0.071±0.02 0.142±0.00 0.072±0.03 0.020±0.00 0.094±0.07 0.020±0.01 0.378±0.00 0.102±0.07 0.120±0.10 0.949±0.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000420 CIL_000420_0003 CGP 6:29722775-29831125

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172785 H2-D1-001 protein_coding Mus_musculus 0 215
ENSMUST00000074806 H2-Q2-001 protein_coding Mus_musculus 0 198
ENSMUST00000073208 H2-Q1-001 protein_coding Mus_musculus 8.40779e-45 187
ENSMUST00000105041 H2-Q1-002 protein_coding Mus_musculus 8.40779e-45 187
ENSMUST00000172994 H2-Q1-003 retained_intron Mus_musculus 8.40779e-45 187

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