C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 1A (SWI-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000457599 ARID1A-002 ENSG00000117713 9606 + 1:26696404-26780817 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonKidneyLungOvaryENST00000457599
Transcript ID Bladder Colon Kidney Lung Ovary
ENST00000457599 0.994±0.00 1.004±0.00 1.242±0.00 1.026±0.00 1.177±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0001 VISTA 1:26423129-27024414

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003677 NAS:IEA DNA binding
GO:0003713 NAS transcription coactivator activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA:IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0016514 IDA SWI/SNF complex
GO:0016922 IPI ligand-dependent nuclear receptor binding
GO:0030520 IDA intracellular estrogen receptor signaling pathway
GO:0030521 IDA androgen receptor signaling pathway
GO:0042766 TAS nucleosome mobilization
GO:0042921 IDA glucocorticoid receptor signaling pathway
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0048096 TAS chromatin-mediated maintenance of transcription
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex
GO:0090544 IEA BAF-type complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105897 Arid1a-201 protein_coding Mus_musculus 0 6202
ENSMUST00000145664 Arid1a-001 protein_coding Mus_musculus 0 6124
ENSMUST00000008024 Arid1a-002 protein_coding Mus_musculus 0 4279
ENSMUST00000138473 Arid1a-003 retained_intron Mus_musculus 0 1524
ENSMUST00000139709 Arid1a-004 protein_coding Mus_musculus 0 603
ENSMUST00000168582 Arid1a-006 retained_intron Mus_musculus 0 538
ENSDART00000084263 arid1aa-201 protein_coding Danio_rerio 0 518
ENSDART00000135930 arid1aa-001 protein_coding Danio_rerio 0 518

Loading