C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, gamma 1 pseudogene 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000457622 ACTG1P9-001 ENSG00000229349 9606 + 6:46204729-46207386 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000457622
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000457622 0.118±0.00 0.355±0.00 0.145±0.10 0.232±0.00 0.170±0.00 0.045±0.02 0.218±0.00 0.074±0.01 0.072±0.06 0.020±0.00 0.135±0.00 0.014±0.00 0.142±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YF CIL_0008YF_0001 VISTA 6:45752763-46354264

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 1378
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 1373
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1131
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 1109
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 1038
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 913
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 913
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 905
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 905
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 876
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 837
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 833
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 758
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 750
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 745
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 732
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 732
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 732
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 732
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 732
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 701
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 676
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 614
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 601
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 575
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 540
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 520
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 379
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 370
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 370
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 305
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 303
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 241
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 1.4013e-45 189

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