C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000457967 RP11-389O22.4-001 ENSG00000233839 9606 + 1:113168994-113169403 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLungMuscleTestisENST00000457967
Transcript ID Adrenal Breast Colon Kidney Lung Muscle Testis
ENST00000457967 0.109±0.00 0.058±0.00 0.157±0.00 0.057±0.00 0.221±0.00 0.048±0.00 0.050±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000878 CIL_000878_0001 VISTA 1:112697401-113299438
CIL_0009BY CIL_0009BY_0001 VISTA 1:112697434-113299398

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000181233 Rps19-ps6-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000091925 Rps19-ps4-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000116122 Rps19-ps7-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000168472 Rps19-ps1-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000100614 Rps19-ps2-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000108429 Rps19-006 protein_coding Mus_musculus 0 385
ENSMUST00000108430 Rps19-001 protein_coding Mus_musculus 0 385
ENSMUST00000161787 Rps19-ps9-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000159750 Rps19-ps10-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000124035 Rps19-008 protein_coding Mus_musculus 0 346
ENSMUST00000108428 Rps19-003 protein_coding Mus_musculus 0 346
ENSMUST00000153451 Rps19-005 protein_coding Mus_musculus 0 339
ENSMUST00000116174 Rps19-ps3-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000180745 Rps19-ps5-001 processed_pseudogene Mus_musculus 0 318
ENSMUST00000156372 Rps19-007 protein_coding Mus_musculus 0 316
ENSMUST00000160308 Rps19-ps11-001 processed_pseudogene Mus_musculus 0 313
ENSMUST00000181937 Rps19-ps12-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000180504 Rps19-ps13-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000180714 Rps19-ps8-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000130335 Rps19-010 processed_transcript Mus_musculus 0 246
ENSMUST00000129847 Rps19-004 nonsense_mediated_decay Mus_musculus 0 246
ENSMUST00000119684 Gm9516-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000119674 Gm15504-001 processed_pseudogene Mus_musculus 1.00053e-42 176
ENSMUST00000119807 Gm15745-001 processed_pseudogene Mus_musculus 2e-35 152
ENSMUST00000138662 Rps19-002 retained_intron Mus_musculus 5e-22 108

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