C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor protein, translationally-controlled 1 pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000458298 TPT1P6-001 ENSG00000214460 9606 - 6:85427453-85427966 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000458298
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000458298 0.572±0.00 0.995±0.00 0.209±0.00 0.464±0.00 0.781±0.00 0.207±0.00 0.519±0.00 0.111±0.00 0.260±0.00 1.375±0.00 0.550±0.04 0.473±0.00 0.464±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K0 CIL_0007K0_0001 UCNEbase 6:84361462-85614404
CIL_00066W CIL_00066W_0001 CGP 6:84687351-85495791
CIL_0008Z9 CIL_0008Z9_0001 VISTA 6:84885897-85488288
CIL_0007TL CIL_0007TL_0001 VISTA 6:84971170-85574346

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121046 Tpt1-ps3-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000110894 Tpt1-001 protein_coding Mus_musculus 0 507
ENSMUST00000112150 Tpt1-ps5-201 processed_pseudogene Mus_musculus 0 484
ENSMUST00000134040 Tpt1-005 processed_transcript Mus_musculus 0 394
ENSMUST00000142061 Tpt1-002 protein_coding Mus_musculus 0 394

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