C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000461005 RP4-800G7.1-001 ENSG00000239719 9606 - 7:149191043-149191223 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungMuscleOvaryENST00000461005
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Muscle Ovary
ENST00000461005 0.117±0.00 0.376±0.00 0.134±0.00 0.260±0.00 0.120±0.00 0.380±0.00 1.171±0.00 1.041±0.00 0.244±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004XN CIL_0004XN_0001 CGP 7:149126416-149226248

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 241
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 237
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 233
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 230
ENSMUST00000169457 Rpl36a-006 retained_intron Mus_musculus 0 224
ENSMUST00000142299 Gm13194-001 processed_pseudogene Mus_musculus 0 207

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