C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 53, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000461064 FAM53A-002 ENSG00000174137 9606 - 4:1640495-1668905 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000461064
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000461064 0.139±0.00 0.271±0.00 0.030±0.00 0.177±0.00 0.017±0.00 0.051±0.00 0.287±0.00 0.238±0.00 0.772±0.53 0.187±0.00 11.802±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0001 VISTA 4:1311752-1912379
CIL_0006LY CIL_0006LY_0001 CGP 4:1402932-1684302
CIL_0006LX CIL_0006LX_0001 CGP 4:1617915-1712555

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045329 Fam53a-002 protein_coding Mus_musculus 8e-27 126
ENSMUST00000150033 Fam53a-003 nonsense_mediated_decay Mus_musculus 8e-27 126
ENSMUST00000065162 Fam53a-006 protein_coding Mus_musculus 8e-27 126
ENSMUST00000065119 Fam53a-001 protein_coding Mus_musculus 8e-27 126

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