C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000461283 RBM39-009 ENSG00000131051 9606 - 20:35703610-35739037 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000461283
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000461283 12.273±0.00 28.140±0.00 14.995±0.00 12.022±0.00 22.797±0.00 6.147±0.00 35.777±0.00 3.957±0.00 12.779±0.00 4.921±0.00 34.039±0.00 43.016±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WY CIL_0000WY_0001 CGP 20:35699272-35742312
CIL_0000X2 CIL_0000X2_0001 CGP 20:35703609-35950381

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000146297 Rbm39-003 protein_coding Mus_musculus 0 3133
ENSMUST00000029149 Rbm39-018 protein_coding Mus_musculus 0 3131
ENSMUST00000109587 Rbm39-001 protein_coding Mus_musculus 0 3049
ENSMUST00000155837 Rbm39-002 nonsense_mediated_decay Mus_musculus 0 2370
ENSMUST00000153514 Rbm39-025 nonsense_mediated_decay Mus_musculus 0 2285
ENSMUST00000142071 Rbm39-026 nonsense_mediated_decay Mus_musculus 0 1644
ENSMUST00000119414 Gm15575-001 processed_pseudogene Mus_musculus 0 1162
ENSMUST00000126992 Rbm39-020 protein_coding Mus_musculus 0 1085
ENSMUST00000182280 Gm8816-001 processed_pseudogene Mus_musculus 0 998
ENSMUST00000161037 Gm8837-001 processed_pseudogene Mus_musculus 0 693
ENSMUST00000148794 Rbm39-019 protein_coding Mus_musculus 0 649
ENSMUST00000135274 Rbm39-017 retained_intron Mus_musculus 0 590
ENSMUST00000138381 Rbm39-015 retained_intron Mus_musculus 0 540
ENSMUST00000131625 Rbm39-016 processed_transcript Mus_musculus 0 457
ENSMUST00000130516 Rbm39-006 retained_intron Mus_musculus 0 355
ENSMUST00000146288 Rbm39-021 protein_coding Mus_musculus 0 315
ENSMUST00000140001 Rbm39-010 processed_transcript Mus_musculus 0 305
ENSMUST00000150272 Rbm39-011 processed_transcript Mus_musculus 0 202

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