C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000461690 RPL21-007 ENSG00000122026 9606 + 13:27251561-27256691 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverTestisENST00000461690
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Testis
ENST00000461690 62.820±0.00 139.457±0.00 5.299±0.00 51.650±0.00 87.341±0.00 201.292±0.00 27.118±14.27 14.805±0.00 112.685±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GA CIL_0000GA_0002 CGP 13:27066142-27256691
CIL_0004MI CIL_0004MI_0001 CGP 13:27251309-27273690

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 619
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 599
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 599
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 551
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 549
ENSMUST00000071237 Rpl21-ps10-201 processed_pseudogene Mus_musculus 0 549
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000119332 Gm13604-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 538
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 536
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000119897 Rpl21-ps9-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 527
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 527
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000080223 Rpl21-ps3-201 processed_pseudogene Mus_musculus 0 521
ENSMUST00000081668 Rpl21-ps12-201 processed_pseudogene Mus_musculus 0 521
ENSMUST00000072532 Rpl21-ps13-201 processed_pseudogene Mus_musculus 0 521
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 516
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 0 510
ENSMUST00000080097 Gm16415-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000118772 Gm11975-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000141391 Gm11281-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000077278 Rpl21-ps11-201 processed_pseudogene Mus_musculus 0 492
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000121754 Gm12618-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000120607 Gm13525-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000120348 Gm12123-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000074828 Rpl21-ps6-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000121662 Gm14053-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000079153 Gm8526-201 processed_pseudogene Mus_musculus 0 446
ENSMUST00000117320 Gm15578-001 unprocessed_pseudogene Mus_musculus 0 431
ENSMUST00000080061 Gm8724-201 processed_pseudogene Mus_musculus 0 422
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 375
ENSMUST00000034094 Gins3-201 protein_coding Mus_musculus 0 337
ENSMUST00000120458 Gm7071-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000119382 Gm14106-001 processed_pseudogene Mus_musculus 0 263
ENSMUST00000117461 Gm14657-001 processed_pseudogene Mus_musculus 0 261
ENSDART00000002595 rpl21-001 protein_coding Danio_rerio 0 255
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 0 219
ENSMUST00000120018 Gm13518-001 processed_pseudogene Mus_musculus 0 204
ENSMUST00000119221 Gm12934-001 processed_pseudogene Mus_musculus 7e-38 161
ENSMUST00000170118 Gm17113-001 processed_pseudogene Mus_musculus 1e-34 150
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 1e-34 150

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