C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000461723 UBA52P5-001 ENSG00000243498 9606 + 8:123236852-123237062 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryTestisENST00000461723
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Testis
ENST00000461723 0.341±0.00 1.120±0.00 0.285±0.00 0.407±0.00 0.246±0.00 0.113±0.00 0.398±0.00 0.506±0.00 0.539±0.00 1.510±1.17 0.450±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SQ CIL_0002SQ_0001 CGP 8:123178960-123241398
CIL_0002SN CIL_0002SN_0001 CGP 8:123219957-123274487
CIL_000590 CIL_000590_0001 CGP 8:123226189-123275541

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165126 Uba52-201 protein_coding Mus_musculus 0 196
ENSMUST00000124967 Uba52-006 protein_coding Mus_musculus 0 196
ENSMUST00000135446 Uba52-002 protein_coding Mus_musculus 0 196
ENSMUST00000081940 Uba52-005 protein_coding Mus_musculus 0 196
ENSMUST00000125184 Uba52-001 protein_coding Mus_musculus 0 196
ENSMUST00000129909 Uba52-003 protein_coding Mus_musculus 0 196
ENSMUST00000140679 Uba52-004 protein_coding Mus_musculus 0 196
ENSMUST00000138260 Kxd1-007 protein_coding Mus_musculus 0 196
ENSMUST00000121623 Kxd1-005 protein_coding Mus_musculus 0 196
ENSMUST00000089430 Gm11808-001 protein_coding Mus_musculus 0 196
ENSMUST00000183770 Gm7866-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000118642 Gm7331-001 processed_pseudogene Mus_musculus 0 193
ENSDART00000099105 ubc-001 protein_coding Danio_rerio 1.4013e-45 185
ENSMUST00000127793 Uba52-007 retained_intron Mus_musculus 1.99965e-42 174
ENSMUST00000081864 Gm5239-201 protein_coding Mus_musculus 3.00004e-41 171

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