C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 28B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000461819 CCDC28B-005 ENSG00000160050 9606 + 1:32200644-32205383 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000461819
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000461819 1.892±0.00 6.752±0.00 5.471±0.00 7.605±0.00 3.213±2.50 2.156±0.00 3.238±0.00 2.317±0.00 7.513±0.00 4.170±1.05 2.791±0.78 19.859±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AA CIL_0008AA_0001 VISTA 1:31744429-32345312
CIL_0003PW CIL_0003PW_0002 CGP 1:32200386-32208687

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000151838 Ccdc28b-010 nonsense_mediated_decay Mus_musculus 0 617
ENSMUST00000124630 Ccdc28b-003 processed_transcript Mus_musculus 0 272
ENSMUST00000141361 Ccdc28b-009 retained_intron Mus_musculus 0 272
ENSMUST00000030586 Ccdc28b-001 protein_coding Mus_musculus 0 272
ENSMUST00000106035 Ccdc28b-002 protein_coding Mus_musculus 0 198
ENSMUST00000123943 Ccdc28b-006 processed_transcript Mus_musculus 4e-21 106

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