C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L18a pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000462885 RPL18AP3-001 ENSG00000213442 9606 + 12:104265309-104265836 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000462885
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000462885 0.270±0.00 0.343±0.00 0.315±0.00 0.122±0.01 0.069±0.01 0.063±0.00 0.118±0.00 0.634±0.58 1.907±0.00 0.227±0.06 0.109±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AC CIL_0004AC_0001 CGP 12:104117077-104350305

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054220 Rpl18a-201 protein_coding Mus_musculus 0 643
ENSMUST00000117288 Gm15427-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000121555 Rpl18-ps1-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000161190 Rpl18a-ps1-001 processed_pseudogene Mus_musculus 0 606
ENSDART00000030215 rpl18a-001 protein_coding Danio_rerio 0 392
ENSDART00000148933 rpl18a-002 nonsense_mediated_decay Danio_rerio 0 307
ENSMUST00000178437 Gm9002-001 processed_pseudogene Mus_musculus 0 222

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