C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000462917 EIF1-002 ENSG00000173812 9606 + 17:41688885-41691646 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastENST00000462917
Transcript ID Bladder Breast
ENST00000462917 1.403±0.00 2.298±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TT CIL_0000TT_0002 CGP 17:41619437-41692668
CIL_0007BG CIL_0007BG_0001 CGP 17:41688885-41715969

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049385 Eif1-001 protein_coding Mus_musculus 0 645
ENSMUST00000132618 Eif1-005 processed_transcript Mus_musculus 0 553
ENSMUST00000088313 Emd-002 protein_coding Mus_musculus 0 514
ENSMUST00000152521 Eif1-004 protein_coding Mus_musculus 0 484
ENSMUST00000139846 Eif1-003 processed_transcript Mus_musculus 0 302
ENSMUST00000151513 Eif1-002 protein_coding Mus_musculus 0 300
ENSMUST00000178971 Gm6900-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000139408 Gm10157-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000179168 Gm16378-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000119926 Gm14686-001 transcribed_processed_pseudogene Mus_musculus 0 274
ENSMUST00000084813 RP24-208N6.2-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000072732 Gm5471-201 processed_pseudogene Mus_musculus 0 270
ENSMUST00000076828 Gm5265-201 processed_pseudogene Mus_musculus 0 268
ENSMUST00000173735 Gm6155-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000121450 Eif1-ps3-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000161062 Gm6428-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000100019 Gm6913-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000086606 Eif1-ps1-201 processed_pseudogene Mus_musculus 0 233
ENSMUST00000159003 Gm16125-001 processed_pseudogene Mus_musculus 0 224
ENSDART00000009132 eif1b-201 protein_coding Danio_rerio 0.000000001 69
ENSDART00000151383 eif1b-003 retained_intron Danio_rerio 0.000000001 69
ENSDART00000151582 eif1b-002 retained_intron Danio_rerio 0.000000001 69
ENSDART00000132874 eif1b-001 protein_coding Danio_rerio 0.000000001 69

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