C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: major histocompatibility complex, class I, B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000463574 HLA-B-005 ENSG00000234745 9606 - 6:31355122-31355802 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000463574
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000463574 24.731±0.00 16.236±0.00 148.163±0.00 112.619±0.00 25.222±0.00 78.265±0.00 54.999±0.00 216.835±0.00 1198.202±1019.14 962.281±0.00 132.281±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000420 CIL_000420_0001 CGP 6:31268749-31357188

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113742 Gm11127-001 protein_coding Mus_musculus 0 322
ENSMUST00000097335 Gm8909-201 protein_coding Mus_musculus 0 307
ENSMUST00000174693 Gm8909-003 processed_transcript Mus_musculus 0 307
ENSMUST00000040467 Gm8909-001 protein_coding Mus_musculus 0 307
ENSMUST00000173353 Gm8909-002 protein_coding Mus_musculus 0 307
ENSMUST00000173625 Gm8909-004 processed_transcript Mus_musculus 0 296
ENSMUST00000174250 H2-K2-001 unprocessed_pseudogene Mus_musculus 0 292
ENSMUST00000077960 H2-T22-002 protein_coding Mus_musculus 0 287
ENSMUST00000080015 H2-T22-001 protein_coding Mus_musculus 0 287
ENSMUST00000173280 H2-T22-005 nonsense_mediated_decay Mus_musculus 0 287
ENSMUST00000166442 H2-T10-201 protein_coding Mus_musculus 0 287
ENSMUST00000174382 H2-T10-003 polymorphic_pseudogene Mus_musculus 0 287
ENSMUST00000174625 H2-T10-004 retained_intron Mus_musculus 0 287
ENSMUST00000058801 H2-T22-003 protein_coding Mus_musculus 0 279
ENSMUST00000172633 H2-T22-004 retained_intron Mus_musculus 0 279
ENSMUST00000174778 Gm10499-001 retained_intron Mus_musculus 0 278
ENSMUST00000095300 H2-T3-003 nonsense_mediated_decay Mus_musculus 0 278
ENSMUST00000174101 H2-T3-002 nonsense_mediated_decay Mus_musculus 0 278
ENSMUST00000172663 H2-T3-008 nonsense_mediated_decay Mus_musculus 0 278
ENSMUST00000173629 H2-T3-009 nonsense_mediated_decay Mus_musculus 0 278
ENSMUST00000173435 H2-T3-007 retained_intron Mus_musculus 0 268
ENSMUST00000173133 H2-T3-006 nonsense_mediated_decay Mus_musculus 0 268
ENSMUST00000173577 H2-T3-004 retained_intron Mus_musculus 0 268
ENSMUST00000102675 H2-T3-001 protein_coding Mus_musculus 0 268
ENSMUST00000025312 H2-T3-005 protein_coding Mus_musculus 0 268
ENSMUST00000171139 H2-M2-002 protein_coding Mus_musculus 0 259
ENSMUST00000016427 H2-M2-001 protein_coding Mus_musculus 0 259
ENSMUST00000173127 Gm9574-001 unprocessed_pseudogene Mus_musculus 0 246
ENSMUST00000038580 H2-M3-001 protein_coding Mus_musculus 0 244
ENSMUST00000113760 H2-T24-001 protein_coding Mus_musculus 0 237
ENSMUST00000172895 Gm8810-001 unprocessed_pseudogene Mus_musculus 0 235
ENSMUST00000041398 H2-M10.6-001 protein_coding Mus_musculus 0 206
ENSMUST00000073546 H2-M10.3-001 protein_coding Mus_musculus 0 206
ENSMUST00000023845 H2-M10.2-001 protein_coding Mus_musculus 0 200
ENSMUST00000169950 H2-M10.4-201 protein_coding Mus_musculus 0 200
ENSMUST00000057502 H2-M10.4-001 protein_coding Mus_musculus 0 200
ENSMUST00000173402 Gm5682-001 unprocessed_pseudogene Mus_musculus 0 191
ENSMUST00000041531 H2-M10.5-001 protein_coding Mus_musculus 0 189

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