C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cornichon family AMPA receptor auxiliary protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000465271 CNIH4-001 ENSG00000143771 9606 + 1:224356850-224379452 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000465271
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000465271 2.513±0.00 1.863±0.00 1.149±0.00 2.752±0.29 1.627±0.24 1.639±0.39 0.918±0.44 3.594±0.00 0.836±0.34 1.668±0.57 1.332±0.60 2.124±1.88 1.706±0.52 1.287±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008IP CIL_0008IP_0001 VISTA 1:224201914-224806293
CIL_0005S3 CIL_0005S3_0001 CGP 1:224227334-224379459
CIL_0000C0 CIL_0000C0_0002 CGP 1:224356850-224437033

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000134115 Cnih4-001 protein_coding Mus_musculus 0 760
ENSMUST00000075968 Cnih4-002 processed_transcript Mus_musculus 0 497
ENSMUST00000111057 Cnih4-003 retained_intron Mus_musculus 0 460
ENSMUST00000111059 Cnih4-004 protein_coding Mus_musculus 0 335

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