C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L5 pseudogene 30
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000465511 RPL5P30-001 ENSG00000243431 9606 + 11:118560690-118561580 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000465511
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000465511 0.483±0.00 1.106±0.00 0.212±0.00 0.642±0.32 0.681±0.21 0.208±0.02 0.125±0.00 0.692±0.00 0.094±0.00 0.318±0.17 0.060±0.00 0.576±0.43 0.041±0.00 0.375±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081E CIL_00081E_0001 VISTA 11:118137591-118740525

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071523 Gm15500-001 transcribed_processed_pseudogene Mus_musculus 0 1077
ENSMUST00000071641 Gm15500-002 processed_transcript Mus_musculus 0 1077
ENSMUST00000082223 Rpl5-001 protein_coding Mus_musculus 0 1077
ENSMUST00000121367 Rpl5-ps1-001 processed_pseudogene Mus_musculus 0 1027
ENSMUST00000119057 Rpl5-ps2-001 processed_pseudogene Mus_musculus 0 1022
ENSMUST00000153590 Rpl5-002 protein_coding Mus_musculus 0 776
ENSMUST00000123183 Rpl5-003 retained_intron Mus_musculus 0 649
ENSMUST00000169624 Gm19840-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000140659 Rpl5-005 retained_intron Mus_musculus 0 433
ENSMUST00000118662 Gm15616-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000118025 Gm15766-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000129944 Rpl5-004 retained_intron Mus_musculus 0 272
ENSMUST00000151767 Rpl5-006 retained_intron Mus_musculus 0 230

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