C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: villin-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000465644 VILL-002 ENSG00000136059 9606 + 3:37994153-38007161 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000465644
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000465644 0.717±0.00 0.102±0.00 0.640±0.16 1.720±0.00 2.097±0.00 0.173±0.00 0.353±0.00 1.413±0.00 0.266±0.00 3.854±0.39 2.176±0.05 2.607±0.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CZ CIL_0008CZ_0001 VISTA 3:37464508-38067589
CIL_00099X CIL_00099X_0001 VISTA 3:37469210-38073013
CIL_0005AN CIL_0005AN_0001 CGP 3:37861960-38007188
CIL_0005A4 CIL_0005A4_0001 CGP 3:37988059-38029762

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0007010 IEA cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051386 Vill-001 protein_coding Mus_musculus 0 1225
ENSMUST00000141185 Vill-004 protein_coding Mus_musculus 0 1184
ENSMUST00000074734 Vill-002 protein_coding Mus_musculus 0 780
ENSMUST00000153454 Vill-003 retained_intron Mus_musculus 0 640
ENSMUST00000126251 Vill-005 protein_coding Mus_musculus 0 628
ENSMUST00000153630 Vill-007 nonsense_mediated_decay Mus_musculus 0 337

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