C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 1A (SWI-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000466382 ARID1A-004 ENSG00000117713 9606 + 1:26772964-26781177 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyOvaryPlacentaTestisENST00000466382
Transcript ID Brain Colon Kidney Ovary Placenta Testis
ENST00000466382 5.431±0.00 3.383±0.00 6.136±0.00 4.921±0.00 3.940±0.20 5.714±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0001 VISTA 1:26423129-27024414

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105897 Arid1a-201 protein_coding Mus_musculus 0 3022
ENSMUST00000008024 Arid1a-002 protein_coding Mus_musculus 0 3022
ENSMUST00000145664 Arid1a-001 protein_coding Mus_musculus 0 3022
ENSDART00000084263 arid1aa-201 protein_coding Danio_rerio 0 518
ENSDART00000135930 arid1aa-001 protein_coding Danio_rerio 0 518

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