C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L17 pseudogene 22
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000467688 RPL17P22-001 ENSG00000243592 9606 + 5:56136979-56137531 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonHeartLungOvaryPlacentaTestisENST00000467688
Transcript ID Adipose Colon Heart Lung Ovary Placenta Testis
ENST00000467688 0.072±0.00 0.023±0.00 0.045±0.00 0.093±0.00 0.155±0.09 0.056±0.00 0.102±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007FX CIL_0007FX_0002 CGP 5:55935095-56233359

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 630
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 625
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 608
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 603
ENSMUST00000119156 Rpl17-ps1-001 processed_pseudogene Mus_musculus 0 588
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000164064 Gm6133-201 protein_coding Mus_musculus 0 521
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000146593 Gm15843-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000119137 Gm15497-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000117390 Gm15661-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000139696 Gm8062-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000117990 Gm7831-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000120830 Gm13665-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000121960 Gm14441-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000145241 Gm16259-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000155351 Ndfip2-002 retained_intron Mus_musculus 0 442
ENSMUST00000119012 Gm12380-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 420
ENSMUST00000121672 Gm11363-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000187749 RP23-305F24.2-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000118067 Gm11380-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000117144 Gm6429-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000162128 Gm16111-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000118406 Gm15002-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000127286 Ndfip2-004 retained_intron Mus_musculus 0 279
ENSMUST00000166666 Gm17212-001 processed_pseudogene Mus_musculus 0 230

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