C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prothymosin, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000468027 PTMA-006 ENSG00000187514 9606 + 2:231708530-231712675 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartOvaryENST00000468027
Transcript ID Brain Heart Ovary
ENST00000468027 47.582±0.00 11.134±0.00 54.892±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0001 VISTA 2:231361987-231963495
CIL_0007WD CIL_0007WD_0001 VISTA 2:231362545-231967398
CIL_0007FJ CIL_0007FJ_0001 CGP 2:231592901-231713541
CIL_0007FM CIL_0007FM_0001 CGP 2:231706895-231786272

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045897 Ptma-001 protein_coding Mus_musculus 0 523
ENSMUST00000052615 Gm9800-201 pseudogene Mus_musculus 0 499
ENSMUST00000188533 Ptma-006 protein_coding Mus_musculus 0 457
ENSMUST00000178993 Gm4617-201 processed_pseudogene Mus_musculus 0 422
ENSMUST00000177870 Gm6625-201 protein_coding Mus_musculus 0 370
ENSMUST00000122299 Gm15466-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000175818 Gm19815-001 processed_pseudogene Mus_musculus 0 337
ENSMUST00000179519 Gm21963-201 processed_pseudogene Mus_musculus 0 315
ENSMUST00000117321 Gm9009-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000145087 Gm6706-001 processed_pseudogene Mus_musculus 0 276
ENSMUST00000186255 Ptma-005 protein_coding Mus_musculus 0 261
ENSMUST00000186932 Ptma-004 processed_transcript Mus_musculus 0 257
ENSMUST00000120860 Gm12504-002 processed_transcript Mus_musculus 0 244
ENSMUST00000148026 Gm12504-001 transcribed_processed_pseudogene Mus_musculus 0 226
ENSMUST00000188699 Ptma-003 protein_coding Mus_musculus 0 200

Loading