C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cation channel, sperm associated 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000469461 CATSPER2-006 ENSG00000166762 9606 - 15:43630562-43648877 retained_intron

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000469461
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000469461 0.077±0.00 0.919±0.00 0.278±0.00 0.631±0.05 0.455±0.08 0.258±0.14 0.082±0.02 0.367±0.15 0.094±0.03 0.248±0.02 0.046±0.00 0.541±0.07 0.056±0.02 6.981±5.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0001 VISTA 15:43579049-44181693
CIL_000682 CIL_000682_0001 CGP 15:43599398-43668118

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038073 Catsper2-001 protein_coding Mus_musculus 0 970
ENSMUST00000146521 Catsper2-004 retained_intron Mus_musculus 0 250
ENSMUST00000154604 Catsper2-002 nonsense_mediated_decay Mus_musculus 0 250

Loading