C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide E
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000470492 SNRPE-006 ENSG00000182004 9606 + 1:203861609-203870077 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonMuscleTestisENST00000470492
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Muscle Testis
ENST00000470492 31.419±0.00 60.219±0.00 1.876±0.00 10.231±0.00 44.057±0.00 43.872±0.00 1.726±0.00 48.783±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096T CIL_00096T_0001 VISTA 1:203391843-203993678
CIL_0008W2 CIL_0008W2_0001 VISTA 1:203635137-204239984
CIL_0000TU CIL_0000TU_0002 CGP 1:203861603-204127743

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166915 Snrpe-001 protein_coding Mus_musculus 0 363
ENSMUST00000121967 Gm14284-001 processed_pseudogene Mus_musculus 0 318
ENSMUST00000172079 Snrpe-005 nonsense_mediated_decay Mus_musculus 0 305
ENSMUST00000164096 Snrpe-002 protein_coding Mus_musculus 0 274
ENSMUST00000118757 Gm15553-001 processed_pseudogene Mus_musculus 1.4013e-45 187
ENSMUST00000166291 Snrpe-003 protein_coding Mus_musculus 2e-17 94
ENSMUST00000171264 Snrpe-007 protein_coding Mus_musculus 2e-16 90

Loading