C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000470495 HOXB3-001 ENSG00000120093 9606 - 17:48548870-48553922 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000470495
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000470495 1.183±0.00 2.059±0.00 0.008±0.00 2.542±0.94 4.243±0.00 0.285±0.00 7.747±0.00 0.346±0.16 1.291±0.77 2.252±0.00 0.643±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0001 VISTA 17:48304888-48905406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000979 IEA RNA polymerase II core promoter sequence-specific DNA binding
GO:0001525 IEP angiogenesis
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0009952 IEA anterior/posterior pattern specification
GO:0021546 IEA rhombomere development
GO:0021615 IEA glossopharyngeal nerve morphogenesis
GO:0030878 IEA thyroid gland development
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0050767 IEA regulation of neurogenesis
GO:0051216 IEA cartilage development
GO:0060216 IEA definitive hemopoiesis
GO:0060324 IEA face development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000093944 Hoxb3-002 protein_coding Mus_musculus 0 2771
ENSMUST00000055334 Hoxb3-001 protein_coding Mus_musculus 0 2082
ENSMUST00000123091 Hoxb3-003 protein_coding Mus_musculus 0 268
ENSMUST00000053932 HOXD3-001 nonsense_mediated_decay Mus_musculus 0 268
ENSMUST00000190553 Hoxd3-008 retained_intron Mus_musculus 0 268
ENSMUST00000140666 Hoxd3-007 protein_coding Mus_musculus 0 268
ENSMUST00000047830 Hoxd3-005 protein_coding Mus_musculus 0 268
ENSMUST00000111982 Hoxd3-004 protein_coding Mus_musculus 0 268
ENSMUST00000111983 Hoxd3-001 protein_coding Mus_musculus 0 268
ENSMUST00000123805 Hoxb1-002 processed_transcript Mus_musculus 0.0000000000001 84
ENSMUST00000019117 Hoxb1-001 protein_coding Mus_musculus 0.0000000000001 84

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