C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000472214 CTB-46B19.1-001 ENSG00000242683 9606 - 5:139035148-139035987 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLungMuscleOvaryPlacentaTestisENST00000472214
Transcript ID Adrenal Brain Breast Colon Lung Muscle Ovary Placenta Testis
ENST00000472214 0.104±0.00 0.075±0.00 0.072±0.00 0.200±0.00 0.513±0.00 0.061±0.00 0.211±0.14 0.113±0.00 0.061±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D1 CIL_0005D1_0001 CGP 5:138868923-139293557

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092620 Gm10275-002 processed_transcript Mus_musculus 0 455
ENSMUST00000126610 Rpl12-001 protein_coding Mus_musculus 0 455
ENSMUST00000102811 Rpl12-002 processed_transcript Mus_musculus 0 453
ENSMUST00000168697 Gm10275-001 transcribed_processed_pseudogene Mus_musculus 0 449
ENSMUST00000119608 Gm11425-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000076703 Gm9396-001 protein_coding Mus_musculus 0 433
ENSMUST00000116168 Rpl12-ps1-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000121857 Gm15793-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000122012 Gm6285-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000071515 Gm7117-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000092011 Gm16519-201 protein_coding Mus_musculus 0 366
ENSMUST00000172474 Gm20430-001 processed_pseudogene Mus_musculus 0 220
ENSMUST00000117322 Gm12038-001 processed_pseudogene Mus_musculus 1.4013e-45 187
ENSMUST00000154340 Rpl12-003 processed_transcript Mus_musculus 7e-37 158
ENSMUST00000117306 Gm13614-001 processed_pseudogene Mus_musculus 1e-33 147
ENSMUST00000134912 Rpl12-007 processed_transcript Mus_musculus 1e-33 147
ENSMUST00000121669 Gm11745-001 processed_pseudogene Mus_musculus 1e-23 113

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