C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000473257 ACTB-011 ENSG00000075624 9606 - 7:5528150-5530604 processed_transcript

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0001 VISTA 7:5332287-5936913
CIL_0002V9 CIL_0002V9_0001 CGP 7:5431335-5563784
CIL_0002V8 CIL_0002V8_0001 CGP 7:5527151-5606655

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 652
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 652
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 612
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 612
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 601
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 595
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 595
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 595
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 595
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 555
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 551
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 551
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 551
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 544
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 544
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 544
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 544
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 538
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 534
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 466
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 422
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 398
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 394
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 311
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 311
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 303
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 279
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 3e-40 169
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 7e-32 141
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 7e-27 124

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